PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000026G0570
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 433aa    MW: 45374.1 Da    PI: 8.9001
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000026G0570genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.32.4e-071101491155
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       RR+ri +++  L+el+ +a      K +Ka++L + ++Y+k Lq
  PH01000026G0570 110 LRRERIAERMKALQELVANA-----NKTDKASMLDEIIDYVKFLQ 149
                      6******************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.23399148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-6109154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-11109159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-11109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-5110149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.97E-8111153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MQPTGREMHG GGGGAGGQDD FLDQMLSTLP AAWPDLGSGK SPWELPGGGA PSEDPAAAAF  60
DESALLASRL RHHQIGGGGD KTGGNQALYN VFGAAGMHGA AAVQPPFGQL RRERIAERMK  120
ALQELVANAN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL GGAAAVAPLV ANMSSESNRN  180
GNGTNSSGND NGANGDNGDS GGSTLQVTEQ QVARLMEEDM GSAMQYLQGK GLCLMPISLA  240
SAISSATSSS LLPRPSIRPL GGAGGPLHEG GSPTSPPLVN GAGGDDSRTI KDTGAGVMLP  300
RRHPMLDRDR VPYTTGKTFH RFPLNAAPTI AIQAITKNSA EFVRPGQHDA GLVGPAHGAA  360
ESMRQGHRAP WSMRQEHGQP PGPCSCGIVR QVHKHGGTVP QNIWLIRPVF NRYLQIWPYA  420
NRICKNGWTG VR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151181.11e-117uncharacterized protein LOC100284814
TrEMBLB6TXR41e-117B6TXR4_MAIZE; BHLH transcription factor
STRINGOB02G42630.11e-100(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-37LJRHL1-like 1